Global Ecology and Biogeography
○ Wiley
Preprints posted in the last 30 days, ranked by how well they match Global Ecology and Biogeography's content profile, based on 47 papers previously published here. The average preprint has a 0.04% match score for this journal, so anything above that is already an above-average fit.
Ding, C.; Newbold, T.; Etard, A.; Cornford, R.; Jung, M.; Brumm, K.; Jiang, Z.; Visconti, P.; Wang, Z.
Show abstract
Land-use and climate change are dominant drivers of terrestrial biodiversity change, yet are usually analysed separately although they co-occur and may interact. We integrated global bird assemblage records from PREDICTS with temperature anomalies and species' ecological characteristics to test how land use modifies biodiversity responses to climate warming across three dimensions: local abundance and richness, compositional dissimilarity among assemblages, and species occurrence across ecological groups. Land use modified warming associations for both abundance and richness. Relative to primary vegetation, warming associations were more positive in low-intensity agriculture for both responses, but more negative for richness in high-intensity agriculture and urban land. Predicted richness remained below the reference, defined as primary vegetation at temperature anomaly 0, across all modified land uses, with the largest declines in high-intensity agriculture (-17.9%) and urban land (-21.8%). Within land-use classes, greater warming exposure was generally associated with higher compositional similarity, consistent with warming associated biotic homogenisation. Occurrence models revealed ecological filtering: broad-niched generalists were favoured in warmer modified habitats, whereas range-restricted habitat specialists were filtered out under intensive land use and warming. Conservation assessments should therefore integrate land-use-warming interactions with changes in assemblage composition and ecological strategies, particularly in agricultural and urban landscapes where warming further disadvantaged range-restricted specialists.
Zou, H.-X.; Hsieh, C.; Zarnetske, P. L.; Zhu, K.; Weeks, B. C.
Show abstract
Species are dramatically shifting their geographical ranges, yet the consequences of these spatial redistributions on species interactions have not been examined at broad spatial and temporal scales. Here, we investigate how the redistribution of species abundance over the past 50 years affects the potential for predator-prey interactions among North American birds. We first predict potential predator-prey interactions based on existing data and functional traits, then construct a novel, abundance-weighted metric of interaction potential for each pair of predator and prey in local communities. Across North America, the potential for predator-prey interactions has been increasing over time. We further show that this widespread increasing trend in interaction potentials is mostly driven by higher abundances of predator species. The spatial redistributions of predators and prey lead to turnover of interactions within local communities, and the turnover is less associated with changes in climate but more associated with human-induced land use changes. Our novel approach and results highlight the importance of considering traits, abundance, and species interactions - including known and potential interactions - when studying the ecological consequences of species range shifts.
Naka, M.; Mori, A. S.; Iritani, R.
Show abstract
Beta diversity is a fundamental component of regional biodiversity that accumulates from compositional differences between local species assemblages. Although beta diversity is increasingly applied across spatial scales, its scale dependence remains incompletely synthesized, particularly concerning variation in spatial scale used to define alpha diversity (grain size). Using tree community data from Barro Colorado Island, we find that both additive and multiplicative beta diversity are consistently higher for unequal than equal grain divisions across different spatial extents and numbers of grains. These results can be explained by Jensen's inequality based on the concave-down relationship of alpha diversity with area that in turn increases beta diversity through the scaling relationship between alpha and gamma diversity. Combined with our additional analysis showing that this prediction is robust to more general models of species richness, including species--area and species--sampling-effort curves, these results reveal a previously unrecognized, predictable range of beta diversity variation.
Goff, K. A.; Koontz, M. J.; Laufenberg, C.; Meng, S.; Reiss, M.; Bishop, C.; Bishop, J.; Burke, M. T.; Smithers, B. V.; Oldfather, M. F.; Sheth, S. N.
Show abstract
Understanding spatial and temporal variation in community composition is central to protecting and monitoring biodiversity. Similarity in the composition of two communities decreases along spatial and temporal gradients, a relationship known as distance decay. Comparing distance-decay relationships across taxonomic, functional, and bioclimatic facets of diversity provides a means of interrogating niche-based versus neutral influences on community assembly. Furthermore, the context in which these facets yield overlapping or complementary information about global change impacts remains poorly understood. In this study, we examined spatiotemporal distance-decay relationships for taxonomic, functional, and bioclimatic facets of alpine plant diversity leveraging elevation gradients on five peaks in the White Mountains, California, USA, sampled at 3-4 time points between 2007 and 2024. Using multivariate Bayesian beta regression models, we estimated the slopes of elevation distance decay over multiple surveys and across taxonomic, functional and bioclimatic diversity to understand how spatial distance-decay relationships are changing through time and across different facets of diversity. We found strong spatial distance decay of taxonomic similarity across all peaks, with the highest elevation peak showing the strongest decay. Functional and bioclimatic similarities decayed more weakly than taxonomic similarity, suggesting environmental filtering shapes trait and niche distributions. Critically, spatial decay patterns showed no temporal signal across facets of diversity, indicating community stasis rather than biotic homogenization or differentiation. This study adds further evidence that xeric alpine plant communities are resisting climate change impacts through time.
Yajima, M.; Seitz, J. I.; Matthaeus, W. J.; Girish Nair, G.; Daly, L.; Caldararu, S.
Show abstract
Plant phenology influences biotic interactions and the cycling of water, carbon, and nutrients, ultimately affecting global climate. Accurately quantifying phenological dynamics is therefore essential for ecological forecasting, yet estimates vary widely depending on data sources, smoothing approaches, and date-extraction techniques. For this reason, the selection of an appropriate processing pipeline requires benchmarking under controlled conditions. In this study, we use a Land Surface Model (LSM) to simulate ecosystem dynamics at four temperate forest sites under five lesser studied climate perturbations. The resulting synthetic dataset allows us to control for environmental conditions while comparing commonly used phenological detection methods (relative thresholds at 10%, 20% and 50%, highest rate of change, detection of inflection points in the curvature angle, detection of recovery and senescence points). Amongst tested methods, we find general agreement in responses to climate alterations, where inflection and low thresholds (10%) methods provide the closest match to the model predicted start of season, with a maximum discrepancy of 4 days. Higher thresholds (20%, 50%) are closer to the model predicted end of season, though discrepancies reach up to 10 days. High thresholds and rate-of-change methods also reliably detect the peak of season. We further show that some methods detect phenological responses missed by temperature-only type growing season, supporting the need for more realistic phenological representations in LSMs. Beyond evaluating extraction methods within a common framework, our study expands on the potential of using LSMs as sandboxes for ecological testing rather than solely predictive tools.
Paul, M. J.; Moreira, M. O.; Liz, A. V.; Decker, S. K.; Moritz, C.; Carstens, B. C.; Carvalho, S. B.
Show abstract
Aim: Given that much of Earth's biodiversity is contained within species, inferring intraspecific genetic diversity and identifying its ecological correlates is essential for understanding evolutionary processes and informing conservation. Here, we investigate broad-scale variation in species-level mitochondrial genetic diversity and evaluate the relative importance of alternative ecological hypotheses proposed to explain it. Location: Brazilian Atlantic Forest, Iberian Peninsula, northwestern Africa, Arabian Peninsula, Madagascar and Australian Monsoonal Tropics. Taxon: Amphibians and reptiles Methods: We assembled a comprehensive dataset by integrating and manually curating mitochondrial sequences, occurrence records, environmental data and species traits from multiple open-access sources. We used multiple mitochondrial genes to estimate mean nucleotide diversity for each study species and quantified regional variation in genetic diversity. We then used random forests models to evaluate the relative importance of selected variables representing hypotheses related to water-energy availability, topography, historical climatic stability, land-cover characteristics, species geographic characteristics, life-history traits, evolutionary history and conservation status. Results: The final dataset comprised 247 amphibians and 295 reptiles, for which 43 and 52 explanatory variables were evaluated, respectively. Overall, the strongest support was found for hypotheses related to life-history traits, topographic heterogeneity and water-energy availability. In amphibians, higher genetic diversity was associated with smaller body size and greater environmental heterogeneity, particularly broader elevational and precipitation gradients. In reptiles, genetic diversity was primarily associated with life-history traits, with species of smaller body size and lower reproductive output exhibiting higher diversity. Long-term climatic stability showed comparatively little explanatory power for both taxa. Main conclusions: Our comprehensive study demonstrates that integrating extensive manual data curation with comparative macrogenetic analyses provides a robust framework for identifying broad-scale ecological correlates of mitochondrial genetic diversity. These findings improve our understanding of the factors associated with contemporary patterns of genetic diversity and provide a foundation for future conservation assessments in data-limited systems.
Wang, X.; Xing, D.
Show abstract
Ecological uniqueness, commonly quantified by local contribution to beta diversity (LCBD), is important for understanding and conserving biodiversity. Its widely documented negative relationship with species richness has led to the view that species-poor communities may be disproportionately important for regional diversity. Here, we derive neutral expectations for richness-uniqueness relationships and show that negative slopes can arise from neutral assembly rather than necessarily reflecting an ecological signal of uniqueness. Neutral simulations validate the analytical expectations across abundance- and incidence-based LCBD formulations. Applying the framework to the Barro Colorado Island tropical forest and North American Breeding Bird Survey, we show that accounting for neutral sampling expectations substantially changes the ranking and spatial distribution of ecologically unique sites. By separating neutral sampling expectations from excess uniqueness, our framework provides a principled basis for interpreting ecological uniqueness and informing biodiversity conservation.
Butterworth, N. J.; Porch, N.; Barnes, A. D.; Carlesso, A.; McGeoch, M. A.; Murphy, N. P.; Dawson, M.; Gibb, H.
Show abstract
Litter invertebrates mediate a substantial proportion of decomposition and nutrient cycling in terrestrial ecosystems, yet how moisture availability structures their communities remains poorly understood. We propose that moisture availability could shape litter faunal communities through two alternate pathways: (1) a productivity effect: greater productivity and detrital inputs in wetter forests should increase litter-faunal abundance, (2) a trait effect: phylogenetic differences in water balance should filter communities according to taxon-specific moisture tolerances. We tested these expectations across 100 forest sites spanning a moisture gradient in south-eastern Australia, from dry sclerophyll forest to cool temperate rainforest. Measuring 11 focal invertebrate taxa, total litter-faunal abundance increased threefold across the moisture gradient, from 400,000 individuals per hectare of dry forest to 1.2 million individuals per hectare of rainforest - consistent with greater resource availability in wetter and more productive habitats. However, this overall abundance trend masked pronounced variation in community composition across habitat types. While moisture-sensitive crustaceans and myriapods (particularly Isopoda and Chilopoda) were concentrated in rainforest litter, two groups of hexapods (Blattodea and Embioptera) were most abundant in dry forest litter and declined sharply toward rainforest habitat. These contrasting responses indicate that dry forests do not simply represent depauperate versions of wet-forest communities but harbour their own distinct and abundant litter invertebrate assemblages. Thus, moisture structures litter faunal communities via both proposed mechanisms: (1) a productivity effect and (2) a trait filtering effect. Given that moisture fundamentally structures litter faunal communities, shifts in forest moisture regimes under climate change may substantially alter detritivore communities, with consequences for decomposition processes and nutrient cycling globally.
Beneat, M.; Morell, A.; Moullec, F.; Barrier, N.; Shin, Y.-J.; Ernande, B.
Show abstract
Resting metabolic rate, the basal energy required for an organism's maintenance, is central to predicting the eco-evolutionary consequences of environmental and anthropogenic pressures on marine ectotherms. Yet, direct measurements remain extremely scarce, covering less than 1% of marine fish species. Building on the Pace Of Life Syndrome (POLS) hypothesis, which posits a positive correlation between metabolism and life-history speed, we inferred temperature- and mass-specific resting metabolic rate for 18,214 fish species (16,998 Teleostei and 1,216 Elasmobranchii). Estimates were derived from relationships with 15 functional traits and phylogeny using phylogenetic structural equation modelling, a novel approach combining phylogenetic comparative methods with structural equation models. Cross-validations indicated high predictive performance, although some clades require cautious interpretation due to limited empirical data. In line with expectations from life-history theory, ecological niche and morphology, species with the highest metabolic rates were small, narrow, shallow-bodied, and long-jawed pelagic fish with high mortality, short lifespan and rapid growth - traits typical of small epipelagics. The metabolic rate variation aligned with the slow-fast life-history continuum, supporting the POLS hypothesis, but was equally explained by reproductive strategy: highly fecund, fast species exhibited the highest metabolic rate independent of mass and temperature, whereas low-fecundity slow species had the lowest. By filling a critical physiological data gap, our dataset provides a foundation to test long-standing ecological and evolutionary hypotheses such as POLS, and offers a powerful resource to improve models of species and community responses to climate change and exploitation, ultimately supporting physiology-informed ecosystem management.
Carrieri, E.; Nguyen, H. T.; Fabio, M.; Anselmetto, N.; Morresi, D.; Garbarino, M.
Show abstract
1. Plant populations at high elevation persist near their physiological limits, and treeline position is one of the clearest expressions of this constraint. In many mountain regions, however, this limit reflects historical land use as much as climate. Treeline shift is most often tracked as the displacement of a boundary line (1D) overlooking structural changes only visible when the ecotone is analysed as a surface (2D). 2. We reconstructed treeline ecotone dynamics at nine sites in the Italian Alps using aerial imagery from 1954 and 2017. At each site we detected the timberline and tree species line, quantified elevational displacement, and measured ecotonal surface change, relating them to climatic, land-use, and topographic predictors. 3. Both boundaries advanced upslope at all nine sites, with timberlines shifting faster (1.6 m/yr) than tree species lines (1.1 m/yr). This decoupled velocity caused the ecotonal surface to contract by ~17%. Land-use variables consistently explained more variance than climatic ones. 4. Land-use legacy and abandonment have a major role in shaping treeline dynamics. Boundary displacement reveals vegetation advance at both margins, while the surface view reveals concurrent narrowing of the habitat available for tree establishment. Both perspectives are needed to fully characterize how plant populations respond to shifting limiting factors at the treeline ecotone.
McNichol, B. H.; Dunn, C.; Granville, D.; Hoffart, L.; McGuire, B.; Ridder, A.; Wang, R.; Russo, S. E.
Show abstract
Aim Regional climate-change refugia - areas where abiotic conditions related to hydrology and topography sustain unique plant communities despite an otherwise unsuitable regional macroclimate - have been essential for maintaining biodiversity through past climatic transitions. At fine spatial scales, regional refugia can also contain microrefugia, where canopy structure and topography strongly buffer understory microclimate. We tested whether such microrefugia structure understory plant communities within a regional climate-change refugium, where sheltered, groundwater-fed canyons have sustained a biogeographically distinctive flora since the Last Glacial Maximum. Location Temperate forest in the North American Great Plains, Nebraska, USA. Methods In a 20.2-ha forest inventory plot spanning a sharp topographic gradient, we quantified diversity, composition, and distributions and of understory woody and herbaceous plants across seven functional groups along fine-scale topographic, light, and soil moisture gradients. Results Woody species density and richness were significantly higher within sheltered microrefugia in canyon bottoms and on forested slopes and strongly decreased with increasing canopy openness, whereas C4 grass richness was highest along the exposed, high-light forest-prairie ecotone, reflecting divergent functional group responses to microclimate buffering. Soil moisture structured richness across functional groups: woody plant and C3 grass richness peaked at moisture extremes, sedge richness at intermediate moisture variability, and C4 grass richness declined with increasing moisture variability. Both woody and herbaceous understory plants showed strong variation in composition with topography; in particular, woody seedlings and graminoids exhibited strong species turnover with increasing elevation. Main Conclusions These results demonstrate that topographically driven microrefugia support disproportionate understory biodiversity and suggest that protecting both regional refugia and finer-scale microrefugia will be critical for conserving plant communities, including species documented exclusively in microrefugia, as macroclimate continues to change.
ElKhouri-Vidarte, N.; Cano, E.; Trevino-Zevallos, I.; Lara, E.
Show abstract
The Peruvian Andes, and especially its slopes towards the Amazonian Basin are well-known biodiversity hotspots for plants and animals, which represent the visible part of biodiversity. However, not much is known about microeukaryotic diversity, despite the significant role protists play in the ecosystem. Based on a molecular survey of the diversity of Arcellinida (a group of amoebae well known for its environmental sensitivity and restricted geographical distributions), we estimated its diversity along an elevation gradient spanning more than 3000 meters. Surprisingly, Neotropical forest Arcellinida were less abundant and diverse than in most other extratropical biomes; nevertheless, communities differed strongly in their taxonomic composition as compared with forests in higher latitudes. Notably, sequences related to Trigonopyxis were most abundant, whereas this group occurs only marginally in extratropical settings. Elevation influenced beta diversity, showing different assembly processes occurring at different elevation belts. Canopy cover positively influenced both phylogenetic and taxonomic diversity, showing the importance of above and below ground integration in tropical forests.
Murillo-Ramos, L.; V.L. Freitas, A.; Repulles, M.; Espeland, M.; Matos-Maravi, P.; Chazot, N.
Show abstract
The palaeogeographic history of the Neotropics has inspired multiple diversification models, emphasizing either the Andes or Amazonia as primary drivers of biodiversity. However, the extensive Pebas wetland system that covered western Amazonia during the Miocene has gained attention as a potential barrier to dispersal and diversification. This system may have contributed to the modern diversity imbalance between the Andes and Amazonia, known as the Gentry pattern. Most evidence for this hypothesis comes from isolated case studies and fossils. Here, we conduct a meta-analysis including 1,361 species of Neotropical butterflies to evaluate the role of the Pebas wetland on the dynamics of dispersal and diversification. We found that Andean- and Amazonian-centred clades show complementary but temporarily distinct biogeographic patterns. High Andean diversity reflects an Andean origin, with early occupancy and diversification occurring within the Andes, followed by post-Pebas dispersal into Amazonia. By contrast, Amazonian-centred clades, reflect an Amazonian origin, with an early diversification in Amazonia and subsequent post-Pebas colonization of the Andes. While several clades show little evidence of Pebas influence, our study suggests that the Pebas wetland did not uniformly restrict diversification, but rather selectively constrained dispersal between the Andes and Amazonia, preventing simultaneous diversification in both regions and thereby creating a diversity imbalance that characterizes the modern Neotropic.
Chazot, N.; Dore, M.; Mathou, A.; Willmott, K. R.; Lagarde, S.; Freitas, A. V. L.; Cornette, R.; Elias, M.
Show abstract
Understanding when species diversification and phenotypic evolution are coupled remains a central challenge in macroevolution. Such coupling may depend on the traits considered, phenotypic integration, or the geographic context in which diversification occurs. Here, we investigate these relationships in Ithomiini, a diverse Neotropical butterfly tribe whose diversification is strongly associated with the Andes-Amazonia system. We quantified forewing and hindwing size and shape for 1,618 individuals representing 291 species using geometric morphometrics, and combined these data with phylogenetic comparative methods, diversification-rate estimates, and spatial analyses of species distributions. Evolutionary rate shifts were largely trait- and wing-specific, indicating limited coupling between forewing and hindwing evolution. Across the phylogeny, wing size evolution and extant wing size were not associated with species diversification, nor was hindwing shape evolution. By contrast, forewing shape evolutionary rates showed a positive association with diversification. Spatial analyses revealed that this coupling was geographically concentrated in the Andes, where high diversification rates coincided with elevated forewing size and shape diversity and increased forewing evolutionary rates. Hindwing diversity, by contrast, more closely tracked phylogenetic diversity and showed weaker or opposing relationships with diversification. Our results show that diversification and phenotypic evolution in Ithomiini are neither generally coupled nor fully independent, but linked in trait-specific and geographically structured ways. More broadly, they highlight the need to decompose complex phenotypes and integrate spatial context when testing macroevolutionary coupling.
Hausmann, R.; Chao, A.; Angeleri, R.; Bouget, C.; Brin, A.; Cocciufa, C.; Gossmann, A.; Gossner, M. M.; Haeler, E.; Hagge, J.; Hertlein, M. L.; Hjaelten, J.; Kriegel, P.; Lachat, T.; Larrieu, L.; Macagno, A. L. M.; Mitesser, O.; Sbaraglia, C.; Seibold, S.; Vogel, S.; Zarges, S.; Mueller, J.; Thorn, S.
Show abstract
Aims In forest ecosystems, tree species composition and diversity are fundamental drivers of biodiversity and many species are closely associated to specific tree species as hosts. Saproxylic diversity across tree species may be shaped by interactions between ecological and environmental factors, such as resource availability. However, a throughout and unbiased quantification of diversity across tree species is missing. We investigated patterns an drivers of saproxylic beetle diversity across European tree genera while accounting for differences in sampling effort. Location Europe Methods We used a large dataset, of 25 studies, comprising 500,000 deadwood-dependent beetles, representing 1041 saproxylic beetle species, sampled from 29 tree genera. We accounted for sampling effort by estimating diversity using coverage-based standardization across Hill numbers. We than used linear models to identify drivers of saproxylic beetle diversity across tree genera and assessed differences in community composition using Nonmetric Multidimensional Scaling (NMDS). Additionally, the most abundant beetle families were identified for a subset of 14 genera. Results Quercus supported the highest richness of infrequent, frequent, and highly frequent species, while Fagus exhibited the highest observed (unstandardized) species richness. Beetle communities were less differentiated when focusing on infrequent species, whereas tree genera were separated when focusing on frequent and highly frequent species. In addition, we found that resource availability and maximum tree height best predicted infrequent beetle diversity, whereas resource availability was the main driver of frequent species. In contrast, the same analyses for unstandardized data indicated postglacial occurrence as an important factor for infrequent species. Main conclusions Although resource availability supported the species area hypothesis, standardized data revealed higher richness on smaller trees, partly contradicting this pattern. Our results highlight the importance of accounting for sampling bias and promoting tree diversity, particularly oaks, to sustain saproxylic beetle diversity.
Brandl, S. J.; Foster, N. R.; Semmler, R. F.; Bunholi, I. V.; Duffy, J. E.; Liu, Z.; Connolly, S. R.; Leray, M.; Lefcheck, J. S.; DiBenedetto, K.; Anderson, E. R.; Baker, D. M.; Boza, X.; Canning-Clode, J.; Cardona, V.; Collin, R.; Denis-Roy, L.; Edgar, G. J.; Gueroun, S. K.; Guibert, I.; Janiak, D. S.; Meyer, C. P.; Ogburn, M. B.; Olson, A. M.; Pastorelli, L.; Patrick, C. J.; Prentice, C.; Rappe, M.; Rii, Y. M.; Seymour, M.; Velez-Zuazo, X.; Xue, J.; Casey, J. M.
Show abstract
Earth's biodiversity is distributed unevenly, typically peaking in warm, vegetated, and stable environments. This has frequently been linked to energy availability, which boosts productivity, bolsters populations, and facilitates coexistence. Here, we examine the relationship between energy and biodiversity across coastal oceans using particulate organic matter biogeochemistry and environmental DNA. We reveal that energy quantity (concentrations of carbon, nitrogen, and hydrolyzable amino acids) and salinity, two variables that co-vary with freshwater inflow, jointly predict species richness at regional and global scales. Biodiversity was lowest at sites and locations with high energy inflow and low salinity, suggesting that environmental filtering associated with the osmotic stress induced by freshwater inflow outweighs raw resource availability in governing species richness. Independent of this gradient, however, energy quality (defined via C:N ratios, {delta}C values, and amino acid profiles) was associated with higher biodiversity. Labile, protein-rich, marine-derived resources supported higher biodiversity across all taxa at the regional scale, and a larger number of planktonic consumer taxa at both regional and global scales. High energy quality sites were also enriched in key planktonic groups such as calanoid and cyclopoid copepods, suggesting that these sites act as hotspots of planktonic biodiversity across coastal seascapes. Our findings suggest that few species can directly harness the plentiful resources provided by terrestrial subsidies in coastal oceans because they arrive in low salinity waters. In turn, high-quality food attracts a diverse range of consumers, which may seed the patchy foraging hotspots that characterize open-water food webs. Altered coastal hydrodynamics and biogeochemistry may therefore affect nearshore biodiversity, food webs, and fisheries.
Bauknecht, R.; Rogers, W.; Pearse, A. T.; Jetz, W.
Show abstract
Aim: To test whether individual movement mechanisms inferred from animal tracking data can be scaled up to explain landscape-scale patterns of population density and improve predictions of population redistribution under future environmental change. Location: Texas Gulf Coast, USA Time Period: 2009-2018 Major Taxa Studied: Whooping Crane (Grus americana) Methods: We parameterized individual-level step-selection functions using 14,898 GPS locations from 22 Whooping Cranes and propagated the resulting movement and habitat-selection mechanisms across the landscape to derive steady-state distributions of space use. We compared these movement-informed predictions with correlative species distribution models fitted to the same data. Predictions were evaluated using withheld tracking observations and fully independent population-level aerial-survey data. We then projected both approaches under sea-level-rise scenarios to assess how future habitat loss and fragmentation alter crane space use. Results: Movement mechanisms derived from individual-level tracking data captured the mechanistic dependence of population density on habitat quality and spatial configuration. When projected across the landscape, these mechanisms reproduced fully independently observed density patterns and outperformed conventional species distribution models. Because predictions arose from movement mechanisms rather than occurrence-environment correlations, movement-informed models also captured the effects of habitat reconfiguration under sea-level rise. They projected pronounced population redistribution and an expansion of core space-use areas of up to 80% which conventional models missed. Main Conclusions: Individual movement mechanisms derived from biologging data can scale up to explain current population structure and predict future redistribution under environmental change. By mechanistically accounting for how habitat configuration constrains accessibility, movement-informed models reveal severe impacts of fragmentation that are missed by conventional distribution models. Rapidly expanding biologging datasets therefore offer a scalable basis for connecting individual behavior to macroecological patterns and improving biodiversity forecasts in changing landscapes.
Bricout, B.; Dami, L.; Defos du Rau, P.; Donnet, S.; Galewski, T.; Robin, S.
Show abstract
1. Species monitoring programmes regularly encounter missing data, which complicates tasks such as estimating population size or detecting temporal trends. Selecting an imputation method suited to the properties of the data is therefore an important practical challenge, particularly for species exhibiting overdispersion and zero-inflation. 2. We compare seventeen imputation methods, comprising thirteen Poisson-based statistical models (accounting for overdispersion and zero-inflation, with fixed, random and multivariate structures) and four contrast-based approaches (LORI, MICE, missForest, correspondence analysis). Using four complete monitoring datasets of waterbird species surveyed across France and Italy over 21 years, illustrating a variety of abundance distributions, we introduced missing observations under a realistic Missing At Random mechanism, at rates from 5% to 70%. We evaluated all methods on computational burden, prediction accuracy for positive and null counts, quantification of uncertainty, and accuracy of population-size estimates. 3. No single method dominates across all criteria. Statistical models and contrast-based approaches yield similar point predictions, but only statistical models provide a genuine measure of uncertainty. Models that jointly account for overdispersion and zero-inflation perform best at predicting zero counts and achieving reliable prediction intervals, and the most suitable method ultimately depends on the abundance distribution of the target species. 4. These results provide practical guidance for ecologists selecting an imputation strategy for incomplete count data, highlighting the trade-offs between predictive accuracy, computational cost, and the ability to propagate uncertainty through subsequent ecological analyses such as population-trend estimation.
Raiho, A. M.; Spadaro, E.; Tieu, A.; Guillory, W.; Ackerman, J.; Zhu, Z.; Yang, Z.; Hedges, S. B.
Show abstract
1. Occurrence records underpin biodiversity analyses, but their coordinates are often erroneous or missing. Misplaced coordinates distort environmental predictors and range estimates used in conservation assessment. Existing tools flag suspect records or georeference locality text, but rarely correct coordinates, provide calibrated uncertainty, or quantify downstream consequences. 2. We present GeoMend, a deterministic, rule-based method that flags and corrects suspect coordinates and georeferences records lacking coordinates from locality text, assigning each a precision tier or uncertainty radius. It uses no machine learning or artificial intelligence. We evaluate it against expert coordinates for 16,913 records and 736 species on Hispaniola, compare georeferencers using 5,000 localities from 72 countries, and measure changes in environmental predictors and the extent of occurrence. 3. On held-out Hispaniola records, GeoMend flags 92% of coordinates more than 5 km from expert truth, versus 27% for CoordinateCleaner. Among the accepted corrections with paired coordinates, the median error falls from 2.19 to 0.82 km, and 68% of the complete held-out pairs improve. On records placed by both GeoMend and GEOLocate that also have original coordinates, the median error is 0.67 km for GeoMend versus 10.69 km for GEOLocate. For records lacking coordinates, evaluated uncertainty radii contain expert truth about 92% of the time in well-supported gazetteer classes. Correction reduces the mean standardized environmental distance from expert truth by 38% and moves the extent of occurrence toward expert truth by a median of 8% (mean of 79%). Corrections and newly georeferenced records give 17 Hispaniola species their first range estimate. 4. On the global benchmark, GeoMend is more accurate than GPT-4o for two-thirds of the records placed by all four comparators, with median errors of 4.4 and 10.8 km, respectively. Applied to Global Biodiversity Information Facility (GBIF) records lacking coordinates, it places records from 82,180 previously unmapped species across 233 countries, ranging from precise locality interpretations to administrative centroids. Automated placement makes the global backlog more approachable, while explicit tiers distinguish uses supported by precise and coarse coordinates. Further georeferencing requires regional expertise to combine automated placement with local knowledge.
Lichstein, J. W.; Woods, M. J.; Hogan, J. A.; Domke, G. M.
Show abstract
Forest canopy height is sensitive to shifts in demography (which affect tree size distributions and abundances of short-vs. tall-statured species) and allometry. Demographic and allometric effects on canopy height have not previously been studied across a large region. We analyzed more than two million individual tree measurements from about 60,000 remeasured inventory plots in non-plantation forests across 19 ecoregions of the conterminous United States to quantify changes in aboveground live tree biomass (AGB), canopy height, and its demographic and allometric components from ~2003-2025. We tested the hydraulic limitation hypothesis, which predicts decreasing tree height with increasing hydraulic stress. AGB was strongly correlated with canopy height across ecoregions, and AGB change was strongly correlated with canopy height change over time. Canopy height change was positive in nearly all eastern ecoregions but varied in sign across western ecoregions. Demographic shifts led to increased canopy height in most eastern ecoregions but decreased canopy height in most western ecoregions. In contrast, allometric shifts, averaged across species, caused either positive or no significant change in ecoregion-mean canopy height. Our results were consistent with several predictions of the hydraulic limitation hypothesis: (i) intraspecific allometric shifts were more positive for understory than for canopy trees, (ii) across ecoregions, canopy height was positively correlated with precipitation and negatively correlated with vapor pressure deficit, and (iii) canopy height change over time was positively correlated with precipitation change. However, our results suggest modifications to the hydraulic limitation hypothesis, because allometric shifts tended to be positive, even in ecoregions with decreasing precipitation and increasing vapor pressure deficits. Such allometric shifts, which seem counter to the hydraulic limitation hypothesis, may be caused by CO2-driven increases in water-use efficiency. Whatever their cause, allometric shifts should be accounted for to avoid biased estimates of canopy height change and biomass change.